Species | Accession | Assembly submitted by | Annotation | Proteins | Transcripts | Softmasked genome | Repeat library | Other data | View in browser | Project |
---|---|---|---|---|---|---|---|---|---|---|
Bos gaurus | GCA_014182915.1 | USDA, ARS, USMARC | GTF, GFF3 | FASTA | FASTA | FASTA | FTP dumps | rapid.ensembl.org | BovReg | |
Bos grunniens | GCA_005887515.1 | Lanzhou University | GTF, GFF3 | FASTA | FASTA | FASTA | FTP dumps | ensembl.org | BovReg | |
Bos indicus x Bos taurus | GCA_003369695.2 | University of Adelaide | GTF, GFF3 | FASTA | FASTA | FASTA | FTP dumps | ensembl.org | BovReg | |
Bos indicus x Bos taurus | GCA_003369685.2 | University of Adelaide | GTF, GFF3 | FASTA | FASTA | FASTA | FTP dumps | ensembl.org | BovReg | |
Bos mutus | GCA_000298355.1 | BGI-shenzhen | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | ensembl.org | BovReg |
Bos mutus (Datong Yak) | GCA_007646595.3 | Lanzhou University | GTF, GFF3 | FASTA | FASTA | FASTA | FTP dumps | rapid.ensembl.org | BovReg | |
Bos taurus | GCA_002263795.2 | USDA ARS | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | ensembl.org | BovReg |
Cyprinus carpio carpio | GCA_905221575.1 | WAGENINGEN UR | GTF, GFF3 | FASTA | FASTA | FASTA | FTP dumps | ensembl.org | AQUA-FAANG | |
Danio rerio | GCA_000002035.4 | Genome Reference Consortium | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | ensembl.org | AQUA-FAANG |
Dicentrarchus labrax | GCA_905237075.1 | Hellenic Centre for Marine Research, Institute for Marine Biology, Biotechnology and Aquaculture, Heraklion, Crete, Greece | GTF, GFF3 | FASTA | FASTA | FASTA | Repeatmodeler | FTP dumps | ensembl.org | AQUA-FAANG |
Study name | Species | Archive | Assay type | Secondary Project |
---|---|---|---|---|
Bos taurus | ENA | RNA-seq of total RNA | BovReg | |
Bos taurus | ENA | RNA-seq of coding RNA | BovReg | |
Sus scrofa | ENA | methylation profiling by high throughput sequencing | GENE-SWitCH | |
Gallus gallus | ENA | methylation profiling by high throughput sequencing | GENE-SWitCH | |
Sus scrofa | ENA | RNA-seq of total RNA | GENE-SWitCH | |
Sus scrofa | ENA | microRNA profiling by high throughput sequencing | GENE-SWitCH | |
Gallus gallus | ENA | RNA-seq of total RNA | GENE-SWitCH | |
Gallus gallus | ENA | microRNA profiling by high throughput sequencing | GENE-SWitCH | |
Sus scrofa | ENA | methylation profiling by high throughput sequencing | GENE-SWitCH | |
Gallus gallus | ENA | methylation profiling by high throughput sequencing | GENE-SWitCH |
File name | Assay type | Experiment target | File size | Secondary Project | Download |
---|---|---|---|---|---|
4.48GB | AQUA-FAANG | ||||
4.7GB | AQUA-FAANG | ||||
4.52GB | AQUA-FAANG | ||||
4.67GB | AQUA-FAANG | ||||
3.59GB | AQUA-FAANG | ||||
3.82GB | AQUA-FAANG | ||||
3.35GB | AQUA-FAANG | ||||
3.43GB | AQUA-FAANG | ||||
3.77GB | AQUA-FAANG | ||||
3.93GB | AQUA-FAANG |
BioSamples ID | Species | Sex | Breed | Secondary Project |
---|---|---|---|---|
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH | |||
TN60 | GENE-SWitCH |
BioSamples ID | Material | Organism part/Cell type | Sex | Species | Breed | Secondary Project |
---|---|---|---|---|---|---|
specimen from organism | liver | Male | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Female | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Male | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Female | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Male | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Male | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Male | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Female | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Male | Sus scrofa | TN60 | GENE-SWitCH | |
specimen from organism | liver | Male | Sus scrofa | TN60 | GENE-SWitCH |
Protocol Name | University Name | Protocol Year | Secondary Project |
---|
Protocol Type | Experiment Target | Assay Type | Secondary Project |
---|
Protocol Name | University Name | Protocol Year | Secondary Project |
---|---|---|---|
WU | 2021 | GENE-SWitCH | |
WU | 2022 | GENE-SWitCH | |
Roslin Institute (Edinburgh, UK) | 2021 | GENE-SWitCH | |
Roslin Institute (Edinburgh, UK) | 2022 | GENE-SWitCH | |
INSERM-INRAE | 2021 | GENE-SWitCH |